
Transduce model positions to coefficients and shapes
Source:R/stat_lda.R, R/stat_pca.R, R/transduce.R
transduce.RdPredict coefficients and reconstruct shapes at specified positions in model space.
Usage
# S3 method for class 'stat_lda'
transduce(object, positions)
# S3 method for class 'stat_pca'
transduce(object, positions)
transduce(object, positions)Value
A tibble with columns:
Position column(s): from input positions tibble
Coefficient column(s): coe (or coe_A, coe_B, ...) with proper classes
Inverse shape column(s): coe_i (or coe_A_i, coe_B_i, ...) as matrices
Details
transduce() reconstructs coefficient vectors at specified positions in model
space and applies inverse transformations to obtain shapes.
The positions tibble defines where to reconstruct shapes. For PCA, columns
should be named PC1, PC2, etc. Unspecified PCs default to 0 (mean position).
Shapes are reconstructed using the appropriate inverse method based on coefficient class (eft_i, rft_i, opoly_i, etc.).
See also
tidyr::expand_grid() for creating position grids
Examples
if (FALSE) { # \dontrun{
pca <- boteft %>% stat_pca()
# Single axis
pos <- tibble(PC1 = c(-2, 0, 2))
trans <- transduce(pca, pos)
# Two axes (manual grid)
pos <- tibble(
PC1 = c(-2, 0, 2, -2, 0, 2),
PC2 = c(-1, -1, -1, 1, 1, 1)
)
trans <- transduce(pca, pos)
# Or use expand_grid for convenience
pos <- expand_grid(PC1 = c(-2, 0, 2), PC2 = c(-1, 1))
trans <- transduce(pca, pos)
# Access reconstructed shapes
plot(trans$coe_i[[1]], type = "l")
} # }